easyGWAS - Detailed SNP View

Brief Summary

Experiment Type:

Genome-wide Association Study

Species:

Arabidopsis thaliana

Dataset:

F1-Hybrids (Seymour et. al. 2016, PNAS)

Phenotype:

Rosette Dry Mass (ID: AT1P6698)

Algorithm:

FaSTLMM

Parameters:

Detailed SNP View (Chr1: 4318949)

« Back to Manhattan Plots

Download Detailed Table with Allele and Phenotype Information for SNP (Chr1: 4318949):

Change Y-Axis to -log10(p-value) (Strength of association) Change Y-Axis to R2 (Strength of LD)

Variant Effect Predictor (VEP) Effects (via ENSEMBL REST Services) (Chr1: 4318949)

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